PlantPromoterDB promoter information of AT4G03430.1

Summary of Gene (AT4G03430.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G03430 TAIR NCBI
Gene model	AT4G03430.1
Description	Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes.

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Overview

Focused view (chromosome 4: 1521500-1520301)

`Genome position from initiation codon` `AT4G03435 AT4G03435.1 TSS from cDNA TSS information AT4G03430.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G03430.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 18 - 1520542 -42

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	18	-	1520542	-42

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 1520563 -63

TSS clone T clone - 1520541 -41

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	1520563	-63
TSS clone	`T`	clone	-	1520541	-41

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box CCTTTATAT - 1520566 1520574 -66 -74

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CCTTTATAT`	-	1520566	1520574	-66	-74
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AACCGACT - 1520588 1520595 -88 -95

AtREG641 AACCGACT PPDB Motif AACCG(G/A), CCGAC PLACE Motif CCGAC, RCCGAC

REG AAAAAGCCCATTAAAAAGCCCACTA - 1520620 1520644 -120 -144

AtREG589 AAAAAGCC    AAAAAGCC      PPDB Motif PLACE Motif

AtREG409 AAAAGCCC    AAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA    AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378    AAGCCCAT               PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372     AGCCCATT              PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG357      GCCCATTA             PPDB Motif GCCCA PLACE Motif

AtREG396       CCCATTAA            PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG518                AAGCCCAC   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG510                 AGCCCACT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG532                  GCCCACTA PPDB Motif GCCCA PLACE Motif

REG CTAACGGT - 1520665 1520672 -165 -172

AtREG603 CTAACGGT PPDB Motif PLACE Motif YAACKG, CNGTTR

REG AAACGACGTCGTTTA - 1520733 1520747 -233 -247

AtREG415 AAACGACGTCGTTT PPDB Motif PLACE Motif

AtREG493 AACGACGTCGTT   PPDB Motif ACGT PLACE Motif ACGT

AtREG431   ACGACGTCGT    PPDB Motif ACGT PLACE Motif ACGT

AtREG565        GTCGTTTA PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AACCGACT`		-	1520588	1520595	-88	-95
	AtREG641	`AACCGACT`		PPDB Motif	`AACCG(G/A), CCGAC`	PLACE Motif	`CCGAC, RCCGAC`
REG	`AAAAAGCCCATTAAAAAGCCCACTA`		-	1520620	1520644	-120	-144
	AtREG589	`AAAAAGCC AAAAAGCC`		PPDB Motif		PLACE Motif
	AtREG409	`AAAAGCCC AAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`AAGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG372	`AGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG357	`GCCCATTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG396	`CCCATTAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TTAATGG`
	AtREG518	`AAGCCCAC`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG510	`AGCCCACT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG532	`GCCCACTA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`CTAACGGT`		-	1520665	1520672	-165	-172
	AtREG603	`CTAACGGT`		PPDB Motif		PLACE Motif	`YAACKG, CNGTTR`
REG	`AAACGACGTCGTTTA`		-	1520733	1520747	-233	-247
	AtREG415	`AAACGACGTCGTTT`		PPDB Motif		PLACE Motif
	AtREG493	`AACGACGTCGTT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
	AtREG431	`ACGACGTCGT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
	AtREG565	`GTCGTTTA`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None