PlantPromoterDB promoter information of AT4G04640
Summary of Gene (AT4G04640)
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Overview
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Focused view (chromosome 4: 2352882-2351683)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G04640 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G04640
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 68 | - | 2351923 | -41 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 2352018 | -136 |
| TSS clone | T | clone | - | 2352010 | -128 |
| TSS clone | A | clone | - | 2352003 | -121 |
| TSS clone | C | clone | - | 2352002 | -120 |
| TSS clone | T | clone | - | 2351976 | -94 |
| TSS clone | T | clone | - | 2351973 | -91 |
| TSS clone | C | clone | - | 2351972 | -90 |
| TSS clone | A | clone | - | 2351952 | -70 |
| TSS clone | A | clone | - | 2351950 | -68 |
| TSS clone | A | clone | - | 2351922 | -40 |
| TSS clone | A | clone | - | 2351917 | -35 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTTCTTTCTTCTTCTTC | - | 2351954 | 2351973 | -72 | -91 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGCCACGTCA | - | 2352078 | 2352088 | -196 | -206 | |||
| AtREG508 | ACGCCACG | PPDB Motif | PLACE Motif | GCCAC | |||||
| AtREG371 | CGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG388 | GCCACGTC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG419 | CCACGTCA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| REG | GGGTCAAA | - | 2352208 | 2352215 | -326 | -333 | |||
| AtREG592 | GGGTCAAA | PPDB Motif | PLACE Motif | TTGAC, TTGACC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||