PlantPromoterDB promoter information of AT4G05320.3
Summary of Gene (AT4G05320.3)
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Overview
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Focused view (chromosome 4: 2717787-2718986)
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Genome position
from initiation codon AT4G05320.2 AT4G05320.4 AT4G05320.5 AT4G05320.6 TSS from cDNA TSS information AT4G05320.3 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G05320.3
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 3502 | + | 2718189 | -598 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 2718189 | -598 |
| TSS clone | C | clone | + | 2718190 | -597 |
| TSS clone | A | clone | + | 2718191 | -596 |
| TSS clone | A | clone | + | 2718192 | -595 |
| TSS clone | A | clone | + | 2718196 | -591 |
| TSS clone | G | clone | + | 2718197 | -590 |
| TSS clone | A | clone | + | 2718211 | -576 |
| TSS clone | T | clone | + | 2718602 | -185 |
| TSS clone | T | clone | + | 2718608 | -179 |
| TSS clone | T | clone | + | 2718714 | -73 |
| TSS clone | T | clone | + | 2718740 | -47 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTTCTATAAAAC | + | 2718152 | 2718163 | -635 | -624 |
| Y Patch | TTTCTTCTTCTTCTTCT | + | 2718140 | 2718156 | -647 | -631 |
| Y Patch | CTCTTCTTCTTC | + | 2718177 | 2718188 | -610 | -599 |
| Y Patch | CTTTCTCTC | + | 2718224 | 2718232 | -563 | -555 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACCGTTAG | + | 2717904 | 2717911 | -883 | -876 | |||
| AtREG603 | ACCGTTAG | PPDB Motif | PLACE Motif | YAACKG, CNGTTR | |||||
| REG | TAAACGGCGTC | + | 2717939 | 2717949 | -848 | -838 | |||
| AtREG613 | TAAACGGC | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG524 | AAACGGCG | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG497 | AACGGCGT | PPDB Motif | AAACG(C/G), CCAACGG | PLACE Motif | |||||
| AtREG540 | ACGGCGTC | PPDB Motif | PLACE Motif | ||||||
| REG | TACACGTGTCAT | + | 2718069 | 2718080 | -718 | -707 | |||
| AtREG453 | TACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| AtREG366 | CACGTGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG438 | CGTGTCAT | ABA | PPDB Motif | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||