PlantPromoterDB promoter information of AT4G07390.1

Summary of Gene (AT4G07390.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G07390 TAIR NCBI
Gene model	AT4G07390.1
Description	PQ-loop repeat family protein / transmembrane family protein; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603), Mannose-P-dolichol utilization defect 1 protein (InterPro:IPR016817); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT5G59470.1); Has 451 Blast hits to 449 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 207; Fungi - 81; Plants - 111; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 4194750-4195949)

`Genome position from initiation codon` `TSS from cDNA TSS information AT4G07390.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G07390.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 8 + 4195676 -74

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	8	+	4195676	-74

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 4195650 -100

TSS clone A clone + 4195681 -69

TSS clone A clone + 4195704 -46

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	4195650	-100
TSS clone	`A`	clone	+	4195681	-69
TSS clone	`A`	clone	+	4195704	-46

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CCTCTCTCT + 4195691 4195699 -59 -51

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CCTCTCTCT`	+	4195691	4195699	-59	-51
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TTTAACGG + 4195400 4195407 -350 -343

AtREG610 TTTAACGG PPDB Motif PLACE Motif YAACKG, CNGTTR

REG TAAACGGCCCAAT + 4195415 4195427 -335 -323

AtREG613 TAAACGGC      PPDB Motif AAACG(C/G) PLACE Motif

AtREG377   AACGGCCC    PPDB Motif GCCCA, AAACG(C/G) PLACE Motif GGGCC

AtREG368    ACGGCCCA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG414     CGGCCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352      GGCCCAAT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG GGCTTTTT + 4195497 4195504 -253 -246

AtREG589 GGCTTTTT PPDB Motif PLACE Motif

REG AACGACGTAATTGGGCTGA + 4195583 4195601 -167 -149

AtREG493 AACGACGT            PPDB Motif ACGT PLACE Motif ACGT

AtREG600        TAATTGGG     PPDB Motif GCCCA PLACE Motif

AtREG418         AATTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG402          ATTGGGCT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG609            TGGGCTGA PPDB Motif GCCCA PLACE Motif TGGGCY

REG GCCACGTATTAAAGCCCA + 4195609 4195626 -141 -124

AtREG413 GCCACGTA           PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG545         TTAAAGCC   PPDB Motif PLACE Motif

AtREG365          TAAAGCCC PPDB Motif GCCCA PLACE Motif

AtREG376           AAAGCCCA PPDB Motif GCCCA PLACE Motif TGGGCY

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TTTAACGG`		+	4195400	4195407	-350	-343
	AtREG610	`TTTAACGG`		PPDB Motif		PLACE Motif	`YAACKG, CNGTTR`
REG	`TAAACGGCCCAAT`		+	4195415	4195427	-335	-323
	AtREG613	`TAAACGGC`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG377	`AACGGCCC`		PPDB Motif	`GCCCA, AAACG(C/G)`	PLACE Motif	`GGGCC`
	AtREG368	`ACGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG414	`CGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG352	`GGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`GGCTTTTT`		+	4195497	4195504	-253	-246
	AtREG589	`GGCTTTTT`		PPDB Motif		PLACE Motif
REG	`AACGACGTAATTGGGCTGA`		+	4195583	4195601	-167	-149
	AtREG493	`AACGACGT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
	AtREG600	`TAATTGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG418	`AATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG402	`ATTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG609	`TGGGCTGA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
REG	`GCCACGTATTAAAGCCCA`		+	4195609	4195626	-141	-124
	AtREG413	`GCCACGTA`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, ACGTGKC`
	AtREG545	`TTAAAGCC`		PPDB Motif		PLACE Motif
	AtREG365	`TAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None