PlantPromoterDB promoter information of AT4G08310.1

Summary of Gene (AT4G08310.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G08310 TAIR NCBI
Gene model	AT4G08310.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44780.2); Has 49375 Blast hits to 29075 proteins in 1129 species: Archae - 121; Bacteria - 2824; Metazoa - 24551; Fungi - 5614; Plants - 1764; Viruses - 442; Other Eukaryotes - 14059 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 5253139-5251940)

`Genome position from initiation codon` `TSS from cDNA TSS information AT4G08310.1 5'->3' (-) Promoter sequence AT4G08320.1 AT4G08320.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G08310.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 13 - 5252146 -7

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	13	-	5252146	-7

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone - 5252150 -11

TSS clone T clone - 5252147 -8

TSS clone G clone - 5252146 -7

TSS clone A clone - 5252143 -4

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	-	5252150	-11
TSS clone	`T`	clone	-	5252147	-8
TSS clone	`G`	clone	-	5252146	-7
TSS clone	`A`	clone	-	5252143	-4

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box GTGTATAT - 5252180 5252187 -41 -48

Y Patch CCTTCTTCT - 5252147 5252155 -8 -16

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`GTGTATAT`	-	5252180	5252187	-41	-48
Y Patch	`CCTTCTTCT`	-	5252147	5252155	-8	-16
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TTTAACCGAACCCGACCCG - 5252216 5252234 -77 -95

AtREG645 TTTAACCG            PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG556    AACCGAAC         PPDB Motif AACCG(G/A) PLACE Motif

AtREG451     ACCGAACC        PPDB Motif PLACE Motif

AtREG580         AACCCGAC    PPDB Motif CCGAC PLACE Motif CCGAC

AtREG405          ACCCGACC   PPDB Motif CCGAC PLACE Motif CCGAC

AtREG442           CCCGACCC PPDB Motif CCGAC PLACE Motif CCGAC

AtREG375            CCGACCCG PPDB Motif CCGAC PLACE Motif CCGAC

REG CGAACCGA - 5252299 5252306 -160 -167

AtREG575 CGAACCGA PPDB Motif AACCG(G/A) PLACE Motif

REG CGAACCGA - 5252310 5252317 -171 -178

AtREG575 CGAACCGA PPDB Motif AACCG(G/A) PLACE Motif

REG TAGGGCCCAAAA - 5252353 5252364 -214 -225

AtREG387 TAGGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG400 AGGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG392   GGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG373    GGCCCAAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG529     GCCCAAAA PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TTTAACCGAACCCGACCCG`		-	5252216	5252234	-77	-95
	AtREG645	`TTTAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG556	`AACCGAAC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG451	`ACCGAACC`		PPDB Motif		PLACE Motif
	AtREG580	`AACCCGAC`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG405	`ACCCGACC`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG442	`CCCGACCC`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG375	`CCGACCCG`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
REG	`CGAACCGA`		-	5252299	5252306	-160	-167
	AtREG575	`CGAACCGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CGAACCGA`		-	5252310	5252317	-171	-178
	AtREG575	`CGAACCGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TAGGGCCCAAAA`		-	5252353	5252364	-214	-225
	AtREG387	`TAGGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG400	`AGGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG392	`GGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG373	`GGCCCAAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG529	`GCCCAAAA`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak A clone + 5252811 AT4G08320.1, AT4G08320.2

TSS clone peak A clone + 5252818 AT4G08320.1, AT4G08320.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`A`	clone	+	5252811	AT4G08320.1, AT4G08320.2
TSS clone peak	`A`	clone	+	5252818	AT4G08320.1, AT4G08320.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None