Summary of Gene (AT4G09010)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT4G09010 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 41 | - | 5779390 | -52 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 5779462 | -124 |
TSS clone | T | clone | - | 5779392 | -54 |
TSS clone | G | clone | - | 5779389 | -51 |
TSS clone | T | clone | - | 5779356 | -18 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTTTCTCCTTTCTTCTCTCTTCTCT | - | 5779358 | 5779384 | -20 | -46 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATATTGGG | - | 5779603 | 5779610 | -265 | -272 | |||
AtREG509 | ATATTGGG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ATAAACCGGTTTAA | + | 5783799 | 5783812 | AT4G09020.1 | ||||
AtREG598 | ATAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG436 | AAACCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | TAAACCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | CACGTGGCAAT | + | 5783951 | 5783961 | AT4G09020.1 | ||||
AtREG367 | CACGTGGC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC  | |||
AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG452 | CGTGGCAA | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
AtREG654 | GTGGCAAT | PPDB Motif |   | PLACE Motif | GCCAC  |