PlantPromoterDB promoter information of AT4G09650
Summary of Gene (AT4G09650)
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Overview
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Focused view (chromosome 4: 6099799-6100998)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G09650 5'->3' (+) Promoter sequence AT4G09649.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G09650
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | T | 4 | + | 6100578 | -221 |
| TSS peak | G | 559 | + | 6100752 | -47 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 6100750 | -49 |
| TSS clone | G | clone | + | 6100752 | -47 |
| TSS clone | A | clone | + | 6100753 | -46 |
| TSS clone | G | clone | + | 6100754 | -45 |
| TSS clone | C | clone | + | 6100761 | -38 |
| TSS clone | A | clone | + | 6100793 | -6 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCCTTCTC | + | 6100589 | 6100597 | -210 | -202 |
| Y Patch | CCTTCTTCTTCTTCTTCCTCTCCTCT | + | 6100717 | 6100742 | -82 | -57 |
| Y Patch | TCTCTCTTTCTCTC | + | 6100765 | 6100778 | -34 | -21 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCCACGTGTCG | + | 6100570 | 6100580 | -229 | -219 | |||
| AtREG408 | TCCACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
| AtREG382 | CCACGTGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG366 | CACGTGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG478 | ACGTGTCG | ABA, DREB1Aox, Drought | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||