PlantPromoterDB promoter information of AT4G10250
Summary of Gene (AT4G10250)
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Overview
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Focused view (chromosome 4: 6369537-6370736)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G10250 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G10250
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 6370343 | -194 |
| TSS clone | T | clone | + | 6370454 | -83 |
| TSS clone peak | T | clone | + | 6370457 | -80 |
| TSS clone | G | clone | + | 6370459 | -78 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ATTATATATACAC | + | 6370421 | 6370433 | -116 | -104 |
| Y Patch | TCTCTCTCT | + | 6370352 | 6370360 | -185 | -177 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATAATGGGCCAAT | + | 6370170 | 6370182 | -367 | -355 | |||
| AtREG546 | ATAATGGG | PPDB Motif | PLACE Motif | ||||||
| AtREG357 | TAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG361 | AATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG490 | ATGGGCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG484 | TGGGCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG446 | GGGCCAAT | CK | PPDB Motif | GCCCA | PLACE Motif | GGGCC | |||
| REG | AATAGGCCT | + | 6370186 | 6370194 | -351 | -343 | |||
| AtREG424 | AATAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG649 | ATAGGCCT | PPDB Motif | PLACE Motif | ||||||
| REG | TTAAGGCCCAAT | + | 6370210 | 6370221 | -327 | -316 | |||
| AtREG416 | TTAAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG351 | TAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG353 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | AGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG352 | GGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | TTAAAGGC | + | 6370270 | 6370277 | -267 | -260 | |||
| AtREG639 | TTAAAGGC | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | ATCCAACG | + | 6370289 | 6370296 | -248 | -241 | |||
| AtREG586 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||