Summary of Gene (AT4G10340)
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Overview |
Genome position
from initiation codon AT4G10345.1 TSS from cDNA TSS information AT4G10340 5'->3' (+) Promoter sequence AT4G10345.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 303 | + | 6408148 | -52 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 6408109 | -91 |
TSS clone | A | clone | + | 6408111 | -89 |
TSS clone | T | clone | + | 6408112 | -88 |
TSS clone | T | clone | + | 6408140 | -60 |
TSS clone | C | clone | + | 6408143 | -57 |
TSS clone | A | clone | + | 6408144 | -56 |
TSS clone | C | clone | + | 6408145 | -55 |
TSS clone | T | clone | + | 6408146 | -54 |
TSS clone | A | clone | + | 6408148 | -52 |
TSS clone | G | clone | + | 6408149 | -51 |
TSS clone | T | clone | + | 6408151 | -49 |
TSS clone | T | clone | + | 6408153 | -47 |
TSS clone | C | clone | + | 6408156 | -44 |
TSS clone | T | clone | + | 6408157 | -43 |
TSS clone | T | clone | + | 6408162 | -38 |
TSS clone | A | clone | + | 6408175 | -25 |
TSS clone | A | clone | + | 6408194 | -6 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTTCCTCCTTCT | + | 6408126 | 6408140 | -74 | -60 |
Y Patch | CTCTTCCT | + | 6408150 | 6408157 | -50 | -43 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TAAAAGCC | + | 6408008 | 6408015 | -192 | -185 | |||
AtREG549 | TAAAAGCC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |