PlantPromoterDB promoter information of AT4G10340
Summary of Gene (AT4G10340)
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Overview
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Focused view (chromosome 4: 6419450-6420649)
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Genome position
from initiation codon AT4G10360.2 TSS from cDNA TSS information AT4G10340 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G10340
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 303 | + | 6408148 | -52 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 6408109 | -91 |
| TSS clone | A | clone | + | 6408111 | -89 |
| TSS clone | T | clone | + | 6408112 | -88 |
| TSS clone | T | clone | + | 6408140 | -60 |
| TSS clone | C | clone | + | 6408143 | -57 |
| TSS clone | A | clone | + | 6408144 | -56 |
| TSS clone | C | clone | + | 6408145 | -55 |
| TSS clone | T | clone | + | 6408146 | -54 |
| TSS clone | A | clone | + | 6408148 | -52 |
| TSS clone | G | clone | + | 6408149 | -51 |
| TSS clone | T | clone | + | 6408151 | -49 |
| TSS clone | T | clone | + | 6408153 | -47 |
| TSS clone | C | clone | + | 6408156 | -44 |
| TSS clone | T | clone | + | 6408157 | -43 |
| TSS clone | T | clone | + | 6408162 | -38 |
| TSS clone | A | clone | + | 6408175 | -25 |
| TSS clone | A | clone | + | 6408194 | -6 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTTCCTCCTTCT | + | 6408126 | 6408140 | -74 | -60 |
| Y Patch | CTCTTCCT | + | 6408150 | 6408157 | -50 | -43 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TAAAAGCC | + | 6408008 | 6408015 | -192 | -185 | |||
| AtREG549 | TAAAAGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 8 | + | 6420401 | AT4G10360.1, AT4G10360.2 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 6420457 | AT4G10360.1, AT4G10360.2 |
| TSS clone | C | clone | + | 6420494 | AT4G10360.1, AT4G10360.2 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCCATATAAGA | + | 6420365 | 6420375 | AT4G10360.1, AT4G10360.2 | |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | AGCCACGTC | + | 6420272 | 6420280 | AT4G10360.1, AT4G10360.2 | ||||
| AtREG450 | AGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG388 | GCCACGTC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||