PlantPromoterDB promoter information of AT4G10710.1
Summary of Gene (AT4G10710.1)
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Overview
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Focused view (chromosome 4: 6606500-6605301)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G10710.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G10710.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 23 | - | 6606354 | -904 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 6606354 | -904 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTCTCCC | - | 6606312 | 6606320 | -862 | -870 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GAAGCCCAC | - | 6606398 | 6606406 | -948 | -956 | |||
| AtREG476 | GAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG518 | AAGCCCAC | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | TAAGCCCAATA | - | 6606430 | 6606440 | -980 | -990 | |||
| AtREG426 | TAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG407 | AAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG402 | AGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG355 | GCCCAATA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CATGGGCCTTTA | - | 6606454 | 6606465 | -1004 | -1015 | |||
| AtREG504 | CATGGGCC | PPDB Motif | GCCCA, CCATGG | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | ATGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG353 | TGGGCCTT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG359 | GGGCCTTT | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG467 | GGCCTTTA | PPDB Motif | PLACE Motif | ||||||
| REG | TAAATGGGCCAC | - | 6606487 | 6606498 | -1037 | -1048 | |||
| AtREG443 | TAAATGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG386 | AAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG361 | AATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG490 | ATGGGCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG445 | TGGGCCAC | PPDB Motif | GCCCA | PLACE Motif | GCCAC, GGGCC, TGGGCY | ||||
| REG | TCGGTTTAA | - | 6606643 | 6606651 | -1193 | -1201 | |||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||