Summary of Gene (AT4G11110.1)
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Overview |
Genome position
from initiation codon AT4G11130.1 TSS from cDNA TSS information AT4G11110.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 6771641 | -522 |
TSS clone peak | G | clone | + | 6771715 | -448 |
TSS clone | C | clone | + | 6771716 | -447 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TGTCACGT | + | 6771361 | 6771368 | -802 | -795 | |||
AtREG606 | TGTCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | + | 6780433 | AT4G11130.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTTCTTCT | + | 6780400 | 6780409 | AT4G11130.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TCCGGTTA | + | 6780227 | 6780234 | AT4G11130.1 | ||||
AtREG621 | TCCGGTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
REG | CAACGGTC | + | 6780236 | 6780243 | AT4G11130.1 | ||||
AtREG553 | CAACGGTC | Auxin | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  | |||
REG | ACGGTTTAA | + | 6780251 | 6780259 | AT4G11130.1 | ||||
AtREG652 | ACGGTTTA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | AAAACCGGTC | + | 6780274 | 6780283 | AT4G11130.1 | ||||
AtREG542 | AAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG436 | AAACCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG552 | AACCGGTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |