PlantPromoterDB promoter information of AT4G11150.1
Summary of Gene (AT4G11150.1)
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Overview
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Focused view (chromosome 4: 6799091-6800290)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G11150.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G11150.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 17 | + | 6799980 | -111 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 6799962 | -129 |
| TSS clone | T | clone | + | 6799968 | -123 |
| TSS clone | G | clone | + | 6799980 | -111 |
| TSS clone | A | clone | + | 6799981 | -110 |
| TSS clone | C | clone | + | 6799986 | -105 |
| TSS clone | T | clone | + | 6799988 | -103 |
| TSS clone | T | clone | + | 6799990 | -101 |
| TSS clone | T | clone | + | 6799994 | -97 |
| TSS clone | C | clone | + | 6800035 | -56 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCTCC | + | 6799994 | 6800002 | -97 | -89 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTTAGGCC | + | 6799719 | 6799726 | -372 | -365 | |||
| AtREG563 | CTTAGGCC | PPDB Motif | PLACE Motif | ||||||
| REG | TGGTTCGGTT | + | 6799776 | 6799785 | -315 | -306 | |||
| AtREG655 | TGGTTCGG | PPDB Motif | PLACE Motif | ||||||
| AtREG451 | GGTTCGGT | PPDB Motif | PLACE Motif | ||||||
| AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CTAAGGCCCATAA | + | 6799828 | 6799840 | -263 | -251 | |||
| AtREG577 | CTAAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG351 | TAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG353 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG364 | GGCCCATA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG394 | GCCCATAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GTGGCCCAGA | + | 6799842 | 6799851 | -249 | -240 | |||
| AtREG445 | GTGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GCCAC, GGGCC, TGGGCY | ||||
| AtREG458 | TGGCCCAG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG397 | GGCCCAGA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | TGTCGTTTC | + | 6799878 | 6799886 | -213 | -205 | |||
| AtREG569 | TGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG576 | GTCGTTTC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||