PlantPromoterDB promoter information of AT4G12780.1

Summary of Gene (AT4G12780.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G12780 TAIR NCBI
Gene model	AT4G12780.1
Description	heat shock protein binding; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: heat shock protein binding (TAIR:AT4G12770.1); Has 78836 Blast hits to 40128 proteins in 1831 species: Archae - 193; Bacteria - 20666; Metazoa - 26952; Fungi - 6866; Plants - 3897; Viruses - 541; Other Eukaryotes - 19721 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 7492850-7494049)

`Genome position from initiation codon` `TSS from cDNA TSS information AT4G12780.1 5'->3' (+) Promoter sequence AT4G12730.1 AT4G12731.1 AT4G12735.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G12780.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 54 - 7492861 AT4G12730.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	54	-	7492861	AT4G12730.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone - 7492866 AT4G12730.1

TSS clone T clone - 7492864 AT4G12730.1

TSS clone A clone - 7492861 AT4G12730.1

TSS clone A clone - 7492854 AT4G12730.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	-	7492866	AT4G12730.1
TSS clone	`T`	clone	-	7492864	AT4G12730.1
TSS clone	`A`	clone	-	7492861	AT4G12730.1
TSS clone	`A`	clone	-	7492854	AT4G12730.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box TTTATATATCT - 7492886 7492896 AT4G12730.1

Y Patch TCCTCTCC - 7492862 7492869 AT4G12730.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TTTATATATCT`	-	7492886	7492896	AT4G12730.1
Y Patch	`TCCTCTCC`	-	7492862	7492869	AT4G12730.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AGCCCACT - 7492949 7492956 AT4G12730.1

AtREG510 AGCCCACT PPDB Motif GCCCA PLACE Motif TGGGCY

REG TTGAACCGGGCCTTAA - 7493030 7493045 AT4G12730.1

AtREG640 TTGAACCG         PPDB Motif AACCG(G/A) PLACE Motif

AtREG480 TGAACCGG        PPDB Motif AACCG(G/A) PLACE Motif

AtREG351        GGGCCTTA PPDB Motif GCCCA PLACE Motif GGGCC

AtREG416         GGCCTTAA PPDB Motif PLACE Motif