PlantPromoterDB promoter information of AT4G12790.4

Summary of Gene (AT4G12790.4)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G12790 TAIR NCBI
Gene model	AT4G12790.4
Description	ATP-binding family protein; FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: QQT1 (QUATRE-QUART 1); ATP binding / nucleotide binding (TAIR:AT5G22370.2); Has 1073 Blast hits to 1063 proteins in 199 species: Archae - 79; Bacteria - 0; Metazoa - 345; Fungi - 272; Plants - 80; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 7522142-7520943)

`Genome position from initiation codon` `TSS from cDNA TSS information AT4G12790.4 5'->3' (-) Promoter sequence AT4G12800.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G12790.4

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 13 - 7519397 -505

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	13	-	7519397	-505

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 7519406 -514

TSS clone A clone - 7519396 -504

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	7519406	-514
TSS clone	`A`	clone	-	7519396	-504

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCCTCTCTTCTTCTT - 7519377 7519392 -485 -500

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCCTCTCTTCTTCTT`	-	7519377	7519392	-485	-500
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ATCCACGTGAGACACGT - 7519588 7519604 -696 -712

AtREG547 ATCCACGT          ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG408 TCCACGTG         ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG470          AGACACGT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ATCCACGTGAGACACGT`		-	7519588	7519604	-696	-712
	AtREG547	`ATCCACGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG408	`TCCACGTG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG`
	AtREG470	`AGACACGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 644 + 7521440 AT4G12800.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	644	+	7521440	AT4G12800.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone C clone + 7521408 AT4G12800.1

TSS clone C clone + 7521410 AT4G12800.1

TSS clone A clone + 7521428 AT4G12800.1

TSS clone T clone + 7521429 AT4G12800.1

TSS clone A clone + 7521433 AT4G12800.1

TSS clone A clone + 7521434 AT4G12800.1

TSS clone T clone + 7521435 AT4G12800.1

TSS clone A clone + 7521440 AT4G12800.1

TSS clone T clone + 7521441 AT4G12800.1

TSS clone A clone + 7521443 AT4G12800.1

TSS clone A clone + 7521451 AT4G12800.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`C`	clone	+	7521408	AT4G12800.1
TSS clone	`C`	clone	+	7521410	AT4G12800.1
TSS clone	`A`	clone	+	7521428	AT4G12800.1
TSS clone	`T`	clone	+	7521429	AT4G12800.1
TSS clone	`A`	clone	+	7521433	AT4G12800.1
TSS clone	`A`	clone	+	7521434	AT4G12800.1
TSS clone	`T`	clone	+	7521435	AT4G12800.1
TSS clone	`A`	clone	+	7521440	AT4G12800.1
TSS clone	`T`	clone	+	7521441	AT4G12800.1
TSS clone	`A`	clone	+	7521443	AT4G12800.1
TSS clone	`A`	clone	+	7521451	AT4G12800.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ATATTGGG + 7521251 7521258 AT4G12800.1

AtREG509 ATATTGGG PPDB Motif PLACE Motif