PlantPromoterDB promoter information of AT4G12800
Summary of Gene (AT4G12800)
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Overview
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Focused view (chromosome 4: 7518769-7519968)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G12800 5'->3' (+) Promoter sequence AT4G12790.1
AT4G12790.2 AT4G12790.3 AT4G12790.4 AT4G12790.5 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G12800
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 644 | + | 7521440 | -29 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 7521408 | -61 |
| TSS clone | C | clone | + | 7521410 | -59 |
| TSS clone | A | clone | + | 7521428 | -41 |
| TSS clone | T | clone | + | 7521429 | -40 |
| TSS clone | A | clone | + | 7521433 | -36 |
| TSS clone | A | clone | + | 7521434 | -35 |
| TSS clone | T | clone | + | 7521435 | -34 |
| TSS clone | A | clone | + | 7521440 | -29 |
| TSS clone | T | clone | + | 7521441 | -28 |
| TSS clone | A | clone | + | 7521443 | -26 |
| TSS clone | A | clone | + | 7521451 | -18 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATATTGGG | + | 7521251 | 7521258 | -218 | -211 | |||
| AtREG509 | ATATTGGG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 13 | - | 7519397 | AT4G12790.1, AT4G12790.2, AT4G12790.3, AT4G12790.4, AT4G12790.5 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | - | 7519406 | AT4G12790.1, AT4G12790.2, AT4G12790.3, AT4G12790.4, AT4G12790.5 |
| TSS clone | A | clone | - | 7519396 | AT4G12790.1, AT4G12790.2, AT4G12790.3, AT4G12790.4, AT4G12790.5 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCCTCTCTTCTTCTT | - | 7519377 | 7519392 | AT4G12790.1, AT4G12790.2, AT4G12790.3, AT4G12790.4, AT4G12790.5 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | ATCCACGTGAGACACGT | - | 7519588 | 7519604 | AT4G12790.1, AT4G12790.2, AT4G12790.3, AT4G12790.4, AT4G12790.5 | ||||
| AtREG547 | ATCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG408 | TCCACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
| AtREG470 | AGACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||