Summary of Gene (AT4G12800)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT4G12800 5'->3' (+) Promoter sequence AT4G12840.1
AT4G12840.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 644 | + | 7521440 | -29 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | + | 7521408 | -61 |
TSS clone | C | clone | + | 7521410 | -59 |
TSS clone | A | clone | + | 7521428 | -41 |
TSS clone | T | clone | + | 7521429 | -40 |
TSS clone | A | clone | + | 7521433 | -36 |
TSS clone | A | clone | + | 7521434 | -35 |
TSS clone | T | clone | + | 7521435 | -34 |
TSS clone | A | clone | + | 7521440 | -29 |
TSS clone | T | clone | + | 7521441 | -28 |
TSS clone | A | clone | + | 7521443 | -26 |
TSS clone | A | clone | + | 7521451 | -18 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATATTGGG | + | 7521251 | 7521258 | -218 | -211 | |||
AtREG509 | ATATTGGG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |