PlantPromoterDB promoter information of AT4G13770
Summary of Gene (AT4G13770)
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Overview
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Focused view (chromosome 4: 7993282-7992083)
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Genome position
from initiation codon AT4G13780.1 TSS from cDNA TSS information AT4G13770 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G13770
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 7992317 | -35 |
| TSS clone | A | clone | - | 7992313 | -31 |
| TSS clone | G | clone | - | 7992311 | -29 |
| TSS clone peak | A | clone | - | 7992309 | -27 |
| TSS clone | C | clone | - | 7992305 | -23 |
| TSS clone | A | clone | - | 7992302 | -20 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTTATATATT | - | 7992332 | 7992341 | -50 | -59 |
| TATA Box | TATATAAT | - | 7992343 | 7992350 | -61 | -68 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGGTTAAGTTCGGTTT | - | 7992399 | 7992414 | -117 | -132 | |||
| AtREG605 | CGGTTAAG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AACACGTGA | - | 7992466 | 7992474 | -184 | -192 | |||
| AtREG590 | AACACGTG | ABA, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG628 | ACACGTGA | DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||