PlantPromoterDB promoter information of AT4G13820.1

Summary of Gene (AT4G13820.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G13820 TAIR NCBI
Gene model	AT4G13820.1
Description	disease resistance family protein / LRR family protein; FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, hypocotyl, root, leaf; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP50 (Receptor Like Protein 50); kinase/ protein binding (TAIR:AT4G13920.1); Has 52051 Blast hits to 16651 proteins in 741 species: Archae - 20; Bacteria - 2791; Metazoa - 12150; Fungi - 442; Plants - 33000; Viruses - 20; Other Eukaryotes - 3628 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 8011694-8010495)

`Genome position from initiation codon` `TSS from cDNA TSS information AT4G13820.1 5'->3' (-) Promoter sequence AT4G13830.1 AT4G13830.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G13820.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak G clone - 8010743 -49

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`G`	clone	-	8010743	-49

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak T clone + 8011402 AT4G13830.1, AT4G13830.2

TSS clone peak A clone + 8011432 AT4G13830.1, AT4G13830.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`T`	clone	+	8011402	AT4G13830.1, AT4G13830.2
TSS clone peak	`A`	clone	+	8011432	AT4G13830.1, AT4G13830.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CCTCCCTCCCTCTCTCCC + 8011406 8011423 AT4G13830.1, AT4G13830.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CCTCCCTCCCTCTCTCCC`	+	8011406	8011423	AT4G13830.1, AT4G13830.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CTAATGGGCT + 8011225 8011234 AT4G13830.1, AT4G13830.2

AtREG558 CTAATGGG   PPDB Motif GCCCA PLACE Motif

AtREG357 TAATGGGC PPDB Motif GCCCA PLACE Motif

AtREG372   AATGGGCT PPDB Motif GCCCA PLACE Motif TGGGCY

REG GAAGCCCAAAA + 8011248 8011258 AT4G13830.1, AT4G13830.2

AtREG476 GAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407 AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG469   AGCCCAAA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG529    GCCCAAAA PPDB Motif GCCCA PLACE Motif

REG ATAAGGGC + 8011265 8011272 AT4G13830.1, AT4G13830.2

AtREG616 ATAAGGGC PPDB Motif PLACE Motif

REG AAATACCCTT + 8011361 8011370 AT4G13830.1, AT4G13830.2

AtREG602 AAATACCC   PPDB Motif PLACE Motif

AtREG567 AATACCCT PPDB Motif ACCCT PLACE Motif

AtREG623   ATACCCTT PPDB Motif ACCCT PLACE Motif