PlantPromoterDB promoter information of AT4G13830
Summary of Gene (AT4G13830)
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Overview
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Focused view (chromosome 4: 8019818-8021017)
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Genome position
from initiation codon AT4G13850.2 AT4G13850.3 AT4G13850.4 TSS from cDNA TSS information AT4G13830 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G13830
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | T | clone | + | 8011402 | -116 |
| TSS clone peak | A | clone | + | 8011432 | -86 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCCCTCCCTCTCTCCC | + | 8011406 | 8011423 | -112 | -95 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTAATGGGCT | + | 8011225 | 8011234 | -293 | -284 | |||
| AtREG558 | CTAATGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG357 | TAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG372 | AATGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | GAAGCCCAAAA | + | 8011248 | 8011258 | -270 | -260 | |||
| AtREG476 | GAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG407 | AAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG469 | AGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG529 | GCCCAAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ATAAGGGC | + | 8011265 | 8011272 | -253 | -246 | |||
| AtREG616 | ATAAGGGC | PPDB Motif | PLACE Motif | ||||||
| REG | AAATACCCTT | + | 8011361 | 8011370 | -157 | -148 | |||
| AtREG602 | AAATACCC | PPDB Motif | PLACE Motif | ||||||
| AtREG567 | AATACCCT | PPDB Motif | ACCCT | PLACE Motif | |||||
| AtREG623 | ATACCCTT | PPDB Motif | ACCCT | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 23 | + | 8020960 | AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 8020955 | AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4 |
| TSS clone | T | clone | + | 8020956 | AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4 |
| TSS clone | T | clone | + | 8020959 | AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4 |
| TSS clone | C | clone | + | 8020961 | AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTGTATATAAAGC | + | 8020917 | 8020929 | AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4 | |
| Y Patch | CCTCTTTCTC | + | 8020972 | 8020981 | AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | ACGTGTAC | + | 8020797 | 8020804 | AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4 | ||||
| AtREG562 | ACGTGTAC | ABA, Auxin | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||