Summary of Gene (AT4G13830)
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Overview |
Genome position
from initiation codon AT4G13850.2 AT4G13850.3 AT4G13850.4 TSS from cDNA TSS information AT4G13830 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | T | clone | + | 8011402 | -116 |
TSS clone peak | A | clone | + | 8011432 | -86 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCCCTCCCTCTCTCCC | + | 8011406 | 8011423 | -112 | -95 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CTAATGGGCT | + | 8011225 | 8011234 | -293 | -284 | |||
AtREG558 | CTAATGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG357 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG372 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | GAAGCCCAAAA | + | 8011248 | 8011258 | -270 | -260 | |||
AtREG476 | GAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG469 | AGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG529 | GCCCAAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATAAGGGC | + | 8011265 | 8011272 | -253 | -246 | |||
AtREG616 | ATAAGGGC | PPDB Motif |   | PLACE Motif |   | ||||
REG | AAATACCCTT | + | 8011361 | 8011370 | -157 | -148 | |||
AtREG602 | AAATACCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG567 | AATACCCT | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
AtREG623 | ATACCCTT | PPDB Motif | ACCCT  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 23 | + | 8020960 | AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 8020955 | AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4 |
TSS clone | T | clone | + | 8020956 | AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4 |
TSS clone | T | clone | + | 8020959 | AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4 |
TSS clone | C | clone | + | 8020961 | AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTGTATATAAAGC | + | 8020917 | 8020929 | AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4 | |
Y Patch | CCTCTTTCTC | + | 8020972 | 8020981 | AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ACGTGTAC | + | 8020797 | 8020804 | AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4 | ||||
AtREG562 | ACGTGTAC | ABA, Auxin | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |