PlantPromoterDB promoter information of AT4G13830
Summary of Gene (AT4G13830)
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Overview
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Focused view (chromosome 4: 8021268-8022467)
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Genome position
from initiation codon AT4G13850.2 AT4G13850.3 AT4G13850.4 TSS from cDNA TSS information AT4G13830 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G13830
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | T | clone | + | 8011402 | -116 |
| TSS clone peak | A | clone | + | 8011432 | -86 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCCCTCCCTCTCTCCC | + | 8011406 | 8011423 | -112 | -95 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTAATGGGCT | + | 8011225 | 8011234 | -293 | -284 | |||
| AtREG558 | CTAATGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG357 | TAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG372 | AATGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | GAAGCCCAAAA | + | 8011248 | 8011258 | -270 | -260 | |||
| AtREG476 | GAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG407 | AAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG469 | AGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG529 | GCCCAAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ATAAGGGC | + | 8011265 | 8011272 | -253 | -246 | |||
| AtREG616 | ATAAGGGC | PPDB Motif | PLACE Motif | ||||||
| REG | AAATACCCTT | + | 8011361 | 8011370 | -157 | -148 | |||
| AtREG602 | AAATACCC | PPDB Motif | PLACE Motif | ||||||
| AtREG567 | AATACCCT | PPDB Motif | ACCCT | PLACE Motif | |||||
| AtREG623 | ATACCCTT | PPDB Motif | ACCCT | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 13 | + | 8021723 | AT4G13860.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TTCGGTTTAA | + | 8022200 | 8022209 | AT4G13860.1 | ||||
| AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CCCATTAG | + | 8022222 | 8022229 | AT4G13860.1 | ||||
| AtREG558 | CCCATTAG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AAAGTCAA | + | 8022376 | 8022383 | AT4G13860.1 | ||||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||