PlantPromoterDB promoter information of AT4G13850.4
Summary of Gene (AT4G13850.4)
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Overview
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Focused view (chromosome 4: 8021514-8022713)
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Genome position
from initiation codon AT4G13850.2 AT4G13850.3 AT4G13860.1 TSS from cDNA TSS information AT4G13850.4 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G13850.4
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 23 | + | 8020960 | -354 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 8020955 | -359 |
| TSS clone | T | clone | + | 8020956 | -358 |
| TSS clone | T | clone | + | 8020959 | -355 |
| TSS clone | C | clone | + | 8020961 | -353 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTGTATATAAAGC | + | 8020917 | 8020929 | -397 | -385 |
| Y Patch | CCTCTTTCTC | + | 8020972 | 8020981 | -342 | -333 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGTGTAC | + | 8020797 | 8020804 | -517 | -510 | |||
| AtREG562 | ACGTGTAC | ABA, Auxin | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 13 | + | 8021723 | AT4G13860.1 |
| TSS peak | A | 4 | + | 8022491 | AT4G13860.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | T | clone | + | 8022505 | AT4G13860.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TTCGGTTTAA | + | 8022200 | 8022209 | AT4G13860.1 | ||||
| AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CCCATTAG | + | 8022222 | 8022229 | AT4G13860.1 | ||||
| AtREG558 | CCCATTAG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AAAGTCAA | + | 8022376 | 8022383 | AT4G13860.1 | ||||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||