PlantPromoterDB promoter information of AT4G13880.1

Summary of Gene (AT4G13880.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G13880 TAIR NCBI
Gene model	AT4G13880.1
Description	Receptor Like Protein 48 (AtRLP48); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: AtRLP47 (Receptor Like Protein 47); protein binding (TAIR:AT4G13810.1); Has 49873 Blast hits to 16061 proteins in 732 species: Archae - 34; Bacteria - 3316; Metazoa - 11975; Fungi - 575; Plants - 30018; Viruses - 20; Other Eukaryotes - 3935 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 8020451-8021650)

`Genome position from initiation codon` `AT4G13850.1 AT4G13850.2 AT4G13850.3 AT4G13850.4 TSS from cDNA TSS information AT4G13880.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G13880.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 23 + 8020960 AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	23	+	8020960	AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 8020955 AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4

TSS clone T clone + 8020956 AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4

TSS clone T clone + 8020959 AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4

TSS clone C clone + 8020961 AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	8020955	AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4
TSS clone	`T`	clone	+	8020956	AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4
TSS clone	`T`	clone	+	8020959	AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4
TSS clone	`C`	clone	+	8020961	AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box TTGTATATAAAGC + 8020917 8020929 AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4

Y Patch CCTCTTTCTC + 8020972 8020981 AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TTGTATATAAAGC`	+	8020917	8020929	AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4
Y Patch	`CCTCTTTCTC`	+	8020972	8020981	AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ACGTGTAC + 8020797 8020804 AT4G13850.1, AT4G13850.2, AT4G13850.3, AT4G13850.4

AtREG562 ACGTGTAC ABA, Auxin PPDB Motif ACGT PLACE Motif ACGT, ACGTG