PlantPromoterDB promoter information of AT4G13930.1
Summary of Gene (AT4G13930.1)
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Overview
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Focused view (chromosome 4: 8051021-8049822)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G13930.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G13930.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 179 | - | 8050091 | -70 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 8050093 | -72 |
| TSS clone | A | clone | - | 8050091 | -70 |
| TSS clone | C | clone | - | 8050090 | -69 |
| TSS clone | T | clone | - | 8050087 | -66 |
| TSS clone | T | clone | - | 8050085 | -64 |
| TSS clone | G | clone | - | 8050084 | -63 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCCCTCCCTCTTTCTCC | - | 8050055 | 8050075 | -34 | -54 |
| Y Patch | CCTCTCTTCC | - | 8050100 | 8050109 | -79 | -88 |
| Y Patch | CTCCTCTT | - | 8050123 | 8050130 | -102 | -109 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CAATTGGGCCTTAA | - | 8050287 | 8050300 | -266 | -279 | |||
| AtREG647 | CAATTGGG | PPDB Motif | PLACE Motif | ||||||
| AtREG418 | AATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG352 | ATTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | TTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG353 | TGGGCCTT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG351 | GGGCCTTA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG416 | GGCCTTAA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||