PlantPromoterDB promoter information of AT4G13940
Summary of Gene (AT4G13940)
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Overview
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Focused view (chromosome 4: 8053931-8055130)
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Genome position
from initiation codon AT4G13940.2 AT4G13940.3 AT4G13940.4 TSS from cDNA TSS information AT4G13940 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G13940
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 997 | + | 8054865 | -66 |
| TSS peak | A | 13 | + | 8054968 | 37 |
| TSS peak | C | 8 | + | 8055094 | 163 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 8054861 | -70 |
| TSS clone | C | clone | + | 8054862 | -69 |
| TSS clone | T | clone | + | 8054863 | -68 |
| TSS clone | G | clone | + | 8054865 | -66 |
| TSS clone | C | clone | + | 8054866 | -65 |
| TSS clone | C | clone | + | 8054868 | -63 |
| TSS clone | C | clone | + | 8054870 | -61 |
| TSS clone | C | clone | + | 8054872 | -59 |
| TSS clone | A | clone | + | 8054905 | -26 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CATCTATATATTC | + | 8054826 | 8054838 | -105 | -93 |
| Y Patch | CTTTCTCTTCTCCTC | + | 8054850 | 8054864 | -81 | -67 |
| Y Patch | CTTCTCTCTCTCTCTCTCTCT | + | 8054872 | 8054892 | -59 | -39 |
| Y Patch | CTCCTTTC | + | 8054895 | 8054902 | -36 | -29 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCCCGTTA | + | 8054593 | 8054601 | -338 | -330 | |||
| AtREG401 | GGCCCGTT | PPDB Motif | AAACG(C/G), ACGGGC, CCAACGG | PLACE Motif | GGGCC | ||||
| AtREG399 | GCCCGTTA | PPDB Motif | ACGGGC | PLACE Motif | YAACKG, CNGTTR | ||||
| REG | AGCCACGTGTCC | + | 8054660 | 8054671 | -271 | -260 | |||
| AtREG450 | AGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG367 | GCCACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| AtREG382 | CCACGTGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG366 | CACGTGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG472 | ACGTGTCC | ABA, DREB1Aox, Drought | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| REG | CCGTCCGA | + | 8054686 | 8054693 | -245 | -238 | |||
| AtREG594 | CCGTCCGA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||