PlantPromoterDB promoter information of AT4G14260.1

Summary of Gene (AT4G14260.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G14260 TAIR NCBI
Gene model	AT4G14260.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25920.1); Has 126 Blast hits to 124 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 8218571-8217372)

`Genome position from initiation codon` `TSS from cDNA TSS information AT4G14260.1 5'->3' (-) Promoter sequence AT4G14270.1 AT4G14270.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G14260.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 26 + 8218385 AT4G14270.1, AT4G14270.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	26	+	8218385	AT4G14270.1, AT4G14270.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone + 8218378 AT4G14270.1, AT4G14270.2

TSS clone A clone + 8218379 AT4G14270.1, AT4G14270.2

TSS clone A clone + 8218381 AT4G14270.1, AT4G14270.2

TSS clone C clone + 8218386 AT4G14270.1, AT4G14270.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	+	8218378	AT4G14270.1, AT4G14270.2
TSS clone	`A`	clone	+	8218379	AT4G14270.1, AT4G14270.2
TSS clone	`A`	clone	+	8218381	AT4G14270.1, AT4G14270.2
TSS clone	`C`	clone	+	8218386	AT4G14270.1, AT4G14270.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCTTCTT + 8218341 8218349 AT4G14270.1, AT4G14270.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCTTCTT`	+	8218341	8218349	AT4G14270.1, AT4G14270.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CTTAATGGGCTTATGGGCTTC + 8218091 8218111 AT4G14270.1, AT4G14270.2

AtREG604 CTTAATGG              PPDB Motif PLACE Motif TTAATGG

AtREG396 TTAATGGG             PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG357   TAATGGGC            PPDB Motif GCCCA PLACE Motif

AtREG372    AATGGGCT           PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378     ATGGGCTTATGGGCTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG426      TGGGCTTA         PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG462       GGGCTTAT        PPDB Motif GCCCA PLACE Motif

AtREG394           TTATGGGC    PPDB Motif GCCCA PLACE Motif

AtREG477            TATGGGCT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG476              TGGGCTTC PPDB Motif GCCCA PLACE Motif TGGGCY

REG CCCAATTA + 8218227 8218234 AT4G14270.1, AT4G14270.2

AtREG600 CCCAATTA PPDB Motif GCCCA PLACE Motif

REG ACCGTCAGA + 8218249 8218257 AT4G14270.1, AT4G14270.2

AtREG625 ACCGTCAG PPDB Motif PLACE Motif

AtREG622 CCGTCAGA PPDB Motif PLACE Motif

REG GCCCTTAT + 8218262 8218269 AT4G14270.1, AT4G14270.2

AtREG616 GCCCTTAT PPDB Motif PLACE Motif

REG ACCGTCAGA + 8218278 8218286 AT4G14270.1, AT4G14270.2

AtREG625 ACCGTCAG PPDB Motif PLACE Motif

AtREG622 CCGTCAGA PPDB Motif PLACE Motif

REG TCACACGTGGC + 8218302 8218312 AT4G14270.1, AT4G14270.2

AtREG588 TCACACGT    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG460 CACACGTG   ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG382   ACACGTGG ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG367    CACGTGGC ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC

REG ATAACCGGAT + 8218329 8218338 AT4G14270.1, AT4G14270.2

AtREG548 ATAACCGG   PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG621 TAACCGGA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG561   AACCGGAT PPDB Motif AACCG(G/A) PLACE Motif