Summary of Gene (AT4G14365)
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Overview |
Genome position
from initiation codon AT4G14360.2 AT4G14365.1 TSS from cDNA TSS information AT4G14365 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | - | 8273744 | -59 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 8273720 | -35 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTTCTTCTTCTCCT | - | 8273721 | 8273735 | -36 | -50 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGCGTTTT | - | 8273809 | 8273816 | -124 | -131 | |||
AtREG566 | CGCGTTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | - | 8271111 | AT4G14360.1, AT4G14360.2 |
TSS clone peak | T | clone | - | 8271050 | AT4G14360.1, AT4G14360.2 |
TSS clone | C | clone | - | 8271037 | AT4G14360.1, AT4G14360.2 |
TSS clone | A | clone | - | 8270993 | AT4G14360.1, AT4G14360.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCCTTCTTTCTCTCTTT | - | 8270941 | 8270959 | AT4G14360.1, AT4G14360.2 | |
Y Patch | TCTCTCTCCC | - | 8270962 | 8270971 | AT4G14360.1, AT4G14360.2 | |
Y Patch | TCTCTTTCCT | - | 8271008 | 8271017 | AT4G14360.1, AT4G14360.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |