PlantPromoterDB promoter information of AT4G14420.1
Summary of Gene (AT4G14420.1)
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Overview
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Focused view (chromosome 4: 8304738-8303539)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G14420.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G14420.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 5 | - | 8303827 | -89 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 8303873 | -135 |
| TSS clone | C | clone | - | 8303850 | -112 |
| TSS clone | C | clone | - | 8303847 | -109 |
| TSS clone | T | clone | - | 8303846 | -108 |
| TSS clone | T | clone | - | 8303841 | -103 |
| TSS clone | T | clone | - | 8303800 | -62 |
| TSS clone | C | clone | - | 8303797 | -59 |
| TSS clone | G | clone | - | 8303794 | -56 |
| TSS clone | T | clone | - | 8303791 | -53 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCTCTCTCTCTTTCT | - | 8303796 | 8303812 | -58 | -74 |
| Y Patch | TCTTTCTCCTCCT | - | 8303843 | 8303855 | -105 | -117 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTTGACCC | - | 8303895 | 8303902 | -157 | -164 | |||
| AtREG592 | TTTGACCC | PPDB Motif | PLACE Motif | TTGAC, TTGACC | |||||
| REG | CTCGCGCGAG | - | 8303931 | 8303940 | -193 | -202 | |||
| AtREG512 | CTCGCGCGAG | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | CTACGTGGCGT | - | 8303986 | 8303996 | -248 | -258 | |||
| AtREG495 | CTACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG413 | TACGTGGC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG371 | ACGTGGCG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG508 | CGTGGCGT | PPDB Motif | PLACE Motif | GCCAC | |||||
| REG | CGCGTTTTA | - | 8304066 | 8304074 | -328 | -336 | |||
| AtREG566 | CGCGTTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG564 | GCGTTTTA | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||