PlantPromoterDB promoter information of AT4G14880.1

Summary of Gene (AT4G14880.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G14880 TAIR NCBI
Gene model	AT4G14880.1
Description	Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma. Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA.

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Overview

Focused view (chromosome 4: 8521050-8519851)

`Genome position from initiation codon` `AT4G14880.2 TSS from cDNA TSS information AT4G14880.1 5'->3' (-) Promoter sequence AT4G14890.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G14880.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 34 - 8520395 -345

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	34	-	8520395	-345

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 8520468 -418

TSS clone A clone - 8520467 -417

TSS clone C clone - 8520437 -387

TSS clone C clone - 8520398 -348

TSS clone A clone - 8520397 -347

TSS clone T clone - 8520396 -346

TSS clone A clone - 8520395 -345

TSS clone C clone - 8520394 -344

TSS clone A clone - 8520354 -304

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	8520468	-418
TSS clone	`A`	clone	-	8520467	-417
TSS clone	`C`	clone	-	8520437	-387
TSS clone	`C`	clone	-	8520398	-348
TSS clone	`A`	clone	-	8520397	-347
TSS clone	`T`	clone	-	8520396	-346
TSS clone	`A`	clone	-	8520395	-345
TSS clone	`C`	clone	-	8520394	-344
TSS clone	`A`	clone	-	8520354	-304

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box TCATATATCT - 8520420 8520429 -370 -379

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TCATATATCT`	-	8520420	8520429	-370	-379
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CGCGTTTT - 8520472 8520479 -422 -429

AtREG566 CGCGTTTT PPDB Motif AAACG(C/G) PLACE Motif

REG TTAACCGGAC - 8520536 8520545 -486 -495

AtREG501 TTAACCGG PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG621 TAACCGGA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG573 AACCGGAC PPDB Motif AACCG(G/A) PLACE Motif

REG AAACCGAA - 8520572 8520579 -522 -529

AtREG568 AAACCGAA PPDB Motif AACCG(G/A) PLACE Motif

REG CGTAATTA - 8520672 8520679 -622 -629

AtREG646 CGTAATTA ABA PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CGCGTTTT`		-	8520472	8520479	-422	-429
	AtREG566	`CGCGTTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
REG	`TTAACCGGAC`		-	8520536	8520545	-486	-495
	AtREG501	`TTAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG621	`TAACCGGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG573	`AACCGGAC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`AAACCGAA`		-	8520572	8520579	-522	-529
	AtREG568	`AAACCGAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CGTAATTA`		-	8520672	8520679	-622	-629
	AtREG646	`CGTAATTA`	ABA	PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 10 + 8520866 AT4G14890.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	10	+	8520866	AT4G14890.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 8520832 AT4G14890.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	8520832	AT4G14890.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CGTCTCTC + 8520871 8520878 AT4G14890.1

Y Patch TCTCTCAT + 8520881 8520888 AT4G14890.1

Y Patch CTCTTCCTCTCC + 8520894 8520905 AT4G14890.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CGTCTCTC`	+	8520871	8520878	AT4G14890.1
Y Patch	`TCTCTCAT`	+	8520881	8520888	AT4G14890.1
Y Patch	`CTCTTCCTCTCC`	+	8520894	8520905	AT4G14890.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TTCGGTTT + 8520572 8520579 AT4G14890.1

AtREG568 TTCGGTTT PPDB Motif AACCG(G/A) PLACE Motif

REG TAATTACG + 8520672 8520679 AT4G14890.1

AtREG646 TAATTACG ABA PPDB Motif PLACE Motif

REG TTCGGTTTAA + 8520725 8520734 AT4G14890.1

AtREG568 TTCGGTTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG514 TCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG473   CGGTTTAA PPDB Motif AACCG(G/A) PLACE Motif

REG TTCGGTTTAAGTCGGTTTTCGGTTT + 8520748 8520772 AT4G14890.1

AtREG568 TTCGGTTT         TTCGGTTT PPDB Motif AACCG(G/A) PLACE Motif

AtREG514 TCGGTTTA                 PPDB Motif AACCG(G/A) PLACE Motif

AtREG473   CGGTTTAA                PPDB Motif AACCG(G/A) PLACE Motif

AtREG582        TAAGTCGG           PPDB Motif CCGAC PLACE Motif CCGAC

AtREG641          AGTCGGTT         PPDB Motif AACCG(G/A), CCGAC PLACE Motif CCGAC, RCCGAC