PlantPromoterDB promoter information of AT4G15210
Summary of Gene (AT4G15210)
|
Overview
|
Focused view (chromosome 4: 8670707-8669508)
|
Genome position
from initiation codon TSS from cDNA TSS information AT4G15210 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT4G15210
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 17 | - | 8669465 | -108 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 8669470 | -113 |
| TSS clone | A | clone | - | 8669465 | -108 |
| TSS clone | T | clone | - | 8669464 | -107 |
| TSS clone | G | clone | - | 8669463 | -106 |
| TSS clone | T | clone | - | 8669462 | -105 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTTCTATATAAAGA | - | 8669492 | 8669505 | -135 | -148 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTCGTTTT | - | 8669550 | 8669557 | -193 | -200 | |||
| AtREG520 | GTCGTTTT | PPDB Motif | PLACE Motif | ||||||
| REG | AAATGACG | - | 8669642 | 8669649 | -285 | -292 | |||
| AtREG657 | AAATGACG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||