Summary of Gene (AT4G15210)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT4G15210 5'->3' (-) Promoter sequence AT4G15215.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 17 | - | 8669465 | -108 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 8669470 | -113 |
TSS clone | A | clone | - | 8669465 | -108 |
TSS clone | T | clone | - | 8669464 | -107 |
TSS clone | G | clone | - | 8669463 | -106 |
TSS clone | T | clone | - | 8669462 | -105 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTCTATATAAAGA | - | 8669492 | 8669505 | -135 | -148 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTCGTTTT | - | 8669550 | 8669557 | -193 | -200 | |||
AtREG520 | GTCGTTTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | AAATGACG | - | 8669642 | 8669649 | -285 | -292 | |||
AtREG657 | AAATGACG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |