PlantPromoterDB promoter information of AT4G15490
Summary of Gene (AT4G15490)
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Overview
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Focused view (chromosome 4: 8844553-8843354)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G15490 5'->3' (-) Promoter sequence AT4G15470.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G15490
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 4 | - | 8854351 | -48 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 8854371 | -68 |
| TSS clone | G | clone | - | 8854357 | -54 |
| TSS clone | C | clone | - | 8854333 | -30 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGGTCAAA | - | 8854580 | 8854587 | -277 | -284 | |||
| AtREG592 | GGGTCAAA | PPDB Motif | PLACE Motif | TTGAC, TTGACC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 18 | + | 8843616 | AT4G15470.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 8843567 | AT4G15470.1 |
| TSS clone | T | clone | + | 8843607 | AT4G15470.1 |
| TSS clone | A | clone | + | 8843616 | AT4G15470.1 |
| TSS clone | G | clone | + | 8843627 | AT4G15470.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | AATATATAAATC | + | 8843574 | 8843585 | AT4G15470.1 | |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CAGCGTTTTA | + | 8843453 | 8843462 | AT4G15470.1 | ||||
| AtREG626 | CAGCGTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG564 | GCGTTTTA | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | TTGCCACGTGTAC | + | 8843511 | 8843523 | AT4G15470.1 | ||||
| AtREG452 | TTGCCACG | PPDB Motif | PLACE Motif | GCCAC | |||||
| AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG367 | GCCACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| AtREG382 | CCACGTGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG453 | CACGTGTA | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| AtREG562 | ACGTGTAC | ABA, Auxin | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||