PlantPromoterDB promoter information of AT4G15490
Summary of Gene (AT4G15490)
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Overview
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Focused view (chromosome 4: 8846203-8845004)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G15490 5'->3' (-) Promoter sequence AT4G15470.1
AT4G15475.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G15490
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 4 | - | 8854351 | -48 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 8854371 | -68 |
| TSS clone | G | clone | - | 8854357 | -54 |
| TSS clone | C | clone | - | 8854333 | -30 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGGTCAAA | - | 8854580 | 8854587 | -277 | -284 | |||
| AtREG592 | GGGTCAAA | PPDB Motif | PLACE Motif | TTGAC, TTGACC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 5 | + | 8845037 | AT4G15475.1 |
| TSS peak | A | 4 | + | 8845387 | AT4G15475.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | T | clone | + | 8845921 | AT4G15475.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTTCTTCT | + | 8845010 | 8845018 | AT4G15475.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CCCAATAG | + | 8845235 | 8845242 | AT4G15475.1 | ||||
| AtREG624 | CCCAATAG | PPDB Motif | GCCCA | PLACE Motif | |||||