Summary of Gene (AT4G15490)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT4G15490 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 4 | - | 8854351 | -48 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 8854371 | -68 |
TSS clone | G | clone | - | 8854357 | -54 |
TSS clone | C | clone | - | 8854333 | -30 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGGTCAAA | - | 8854580 | 8854587 | -277 | -284 | |||
AtREG592 | GGGTCAAA | PPDB Motif |   | PLACE Motif | TTGAC, TTGACC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | - | 8850516 | AT4G15480.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTTATATAAATT | - | 8850542 | 8850554 | AT4G15480.1 | |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ACGTGGAT | - | 8850663 | 8850670 | AT4G15480.1 | ||||
AtREG547 | ACGTGGAT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
REG | ACACGTCA | - | 8850718 | 8850725 | AT4G15480.1 | ||||
AtREG517 | ACACGTCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |