PlantPromoterDB promoter information of AT4G15830

Summary of Gene (AT4G15830)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G15830 TAIR NCBI
Gene model	AT4G15830
Description	binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G01450.1); Has 183 Blast hits to 183 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 5; Plants - 61; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 8997548-8996349)

`Genome position from initiation codon` `AT4G15830.1 TSS from cDNA TSS information AT4G15830 5'->3' (-) Promoter sequence AT4G15840.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G15830

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 5 - 8996549 -1

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	5	-	8996549	-1

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCTCTCTTTCTCT - 8996557 8996571 -9 -23

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCTCTCTTTCTCT`	-	8996557	8996571	-9	-23
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CAACGGTC - 8996698 8996705 -150 -157

AtREG553 CAACGGTC Auxin PPDB Motif CCAACGG PLACE Motif YAACKG, CNGTTR

REG GACCGTTGGA - 8996719 8996728 -171 -180

AtREG553 GACCGTTG   Auxin PPDB Motif CCAACGG PLACE Motif YAACKG, CNGTTR

AtREG554   CCGTTGGA PPDB Motif CCAACGG PLACE Motif YAACKG, CNGTTR

REG GTAAACCGAACCGA - 8996736 8996749 -188 -201

AtREG519 GTAAACCG       PPDB Motif AACCG(G/A) PLACE Motif

AtREG514 TAAACCGA      PPDB Motif AACCG(G/A) PLACE Motif

AtREG568   AAACCGAA     PPDB Motif AACCG(G/A) PLACE Motif

AtREG556    AACCGAAC    PPDB Motif AACCG(G/A) PLACE Motif

AtREG451     ACCGAACC   PPDB Motif PLACE Motif

AtREG456      CCGAACCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG575       CGAACCGA PPDB Motif AACCG(G/A) PLACE Motif

REG GAAACGACGTCGT - 8996790 8996802 -242 -254

AtREG576 GAAACGAC      PPDB Motif PLACE Motif

AtREG415 AAACGACG     PPDB Motif PLACE Motif

AtREG493   AACGACGT    PPDB Motif ACGT PLACE Motif ACGT

AtREG431    ACGACGTCGT PPDB Motif ACGT PLACE Motif ACGT

REG TGTCGTTTC - 8996814 8996822 -266 -274

AtREG569 TGTCGTTT PPDB Motif PLACE Motif

AtREG576 GTCGTTTC PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CAACGGTC`		-	8996698	8996705	-150	-157
	AtREG553	`CAACGGTC`	Auxin	PPDB Motif	`CCAACGG`	PLACE Motif	`YAACKG, CNGTTR`
REG	`GACCGTTGGA`		-	8996719	8996728	-171	-180
	AtREG553	`GACCGTTG`	Auxin	PPDB Motif	`CCAACGG`	PLACE Motif	`YAACKG, CNGTTR`
	AtREG554	`CCGTTGGA`		PPDB Motif	`CCAACGG`	PLACE Motif	`YAACKG, CNGTTR`
REG	`GTAAACCGAACCGA`		-	8996736	8996749	-188	-201
	AtREG519	`GTAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG514	`TAAACCGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG568	`AAACCGAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG556	`AACCGAAC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG451	`ACCGAACC`		PPDB Motif		PLACE Motif
	AtREG456	`CCGAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG575	`CGAACCGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`GAAACGACGTCGT`		-	8996790	8996802	-242	-254
	AtREG576	`GAAACGAC`		PPDB Motif		PLACE Motif
	AtREG415	`AAACGACG`		PPDB Motif		PLACE Motif
	AtREG493	`AACGACGT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
	AtREG431	`ACGACGTCGT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
REG	`TGTCGTTTC`		-	8996814	8996822	-266	-274
	AtREG569	`TGTCGTTT`		PPDB Motif		PLACE Motif
	AtREG576	`GTCGTTTC`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 4 + 8996905 AT4G15840.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	4	+	8996905	AT4G15840.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 8996912 AT4G15840.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	8996912	AT4G15840.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GACCGTTG + 8996698 8996705 AT4G15840.1

AtREG553 GACCGTTG Auxin PPDB Motif CCAACGG PLACE Motif YAACKG, CNGTTR

REG TCCAACGGTC + 8996719 8996728 AT4G15840.1

AtREG554 TCCAACGG   PPDB Motif CCAACGG PLACE Motif YAACKG, CNGTTR

AtREG553   CAACGGTC Auxin PPDB Motif CCAACGG PLACE Motif YAACKG, CNGTTR

REG TCGGTTCGGTTTAC + 8996736 8996749 AT4G15840.1

AtREG575 TCGGTTCG       PPDB Motif AACCG(G/A) PLACE Motif

AtREG456 CGGTTCGG      PPDB Motif AACCG(G/A) PLACE Motif

AtREG451   GGTTCGGT     PPDB Motif PLACE Motif

AtREG556    GTTCGGTT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG568     TTCGGTTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG514      TCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG519       CGGTTTAC PPDB Motif AACCG(G/A) PLACE Motif

REG ACGACGTCGTTTC + 8996790 8996802 AT4G15840.1

AtREG431 ACGACGTCGT    PPDB Motif ACGT PLACE Motif ACGT

AtREG493    ACGTCGTT   PPDB Motif ACGT PLACE Motif ACGT

AtREG415     CGTCGTTT PPDB Motif PLACE Motif

AtREG576      GTCGTTTC PPDB Motif PLACE Motif

REG GAAACGACA + 8996814 8996822 AT4G15840.1

AtREG576 GAAACGAC PPDB Motif PLACE Motif

AtREG569 AAACGACA PPDB Motif PLACE Motif