PlantPromoterDB promoter information of AT4G16520
Summary of Gene (AT4G16520)
|
Overview
|
Focused view (chromosome 4: 9309113-9307914)
|
Genome position
from initiation codon AT4G16520.2 TSS from cDNA TSS information AT4G16520 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT4G16520
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 64 | - | 9308430 | -317 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 9308462 | -349 |
| TSS clone | T | clone | - | 9308458 | -345 |
| TSS clone | C | clone | - | 9308454 | -341 |
| TSS clone | T | clone | - | 9308432 | -319 |
| TSS clone | A | clone | - | 9308430 | -317 |
| TSS clone | A | clone | - | 9308429 | -316 |
| TSS clone | T | clone | - | 9308425 | -312 |
| TSS clone | T | clone | - | 9308419 | -306 |
| TSS clone | T | clone | - | 9308398 | -285 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGTCAGC | - | 9308555 | 9308562 | -442 | -449 | |||
| AtREG515 | ACGTCAGC | SA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| REG | ACCGTCAGA | - | 9308589 | 9308597 | -476 | -484 | |||
| AtREG625 | ACCGTCAG | PPDB Motif | PLACE Motif | ||||||
| AtREG622 | CCGTCAGA | PPDB Motif | PLACE Motif | ||||||
| REG | ATCCGGTTC | - | 9308702 | 9308710 | -589 | -597 | |||
| AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG579 | TCCGGTTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||