Summary of Gene (AT4G16520)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT4G16520.2 TSS from cDNA TSS information AT4G16520 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 64 | - | 9308430 | -317 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | - | 9308462 | -349 |
TSS clone | T | clone | - | 9308458 | -345 |
TSS clone | C | clone | - | 9308454 | -341 |
TSS clone | T | clone | - | 9308432 | -319 |
TSS clone | A | clone | - | 9308430 | -317 |
TSS clone | A | clone | - | 9308429 | -316 |
TSS clone | T | clone | - | 9308425 | -312 |
TSS clone | T | clone | - | 9308419 | -306 |
TSS clone | T | clone | - | 9308398 | -285 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACGTCAGC | - | 9308555 | 9308562 | -442 | -449 | |||
AtREG515 | ACGTCAGC | SA | PPDB Motif | ACGT  | PLACE Motif | ACGT  | |||
REG | ACCGTCAGA | - | 9308589 | 9308597 | -476 | -484 | |||
AtREG625 | ACCGTCAG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG622 | CCGTCAGA | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATCCGGTTC | - | 9308702 | 9308710 | -589 | -597 | |||
AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG579 | TCCGGTTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |