PlantPromoterDB promoter information of AT4G17230.1
Summary of Gene (AT4G17230.1)
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Overview
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Focused view (chromosome 4: 9663807-9662608)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G17230.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G17230.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 13 | - | 9663761 | -954 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 9663774 | -967 |
| TSS clone | G | clone | - | 9663768 | -961 |
| TSS clone | A | clone | - | 9663767 | -960 |
| TSS clone | T | clone | - | 9663763 | -956 |
| TSS clone | G | clone | - | 9663761 | -954 |
| TSS clone | A | clone | - | 9663760 | -953 |
| TSS clone | A | clone | - | 9663757 | -950 |
| TSS clone | T | clone | - | 9663756 | -949 |
| TSS clone | A | clone | - | 9663753 | -946 |
| TSS clone | A | clone | - | 9663710 | -903 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCTCTT | - | 9663738 | 9663745 | -931 | -938 |
| Y Patch | TCTCCTTCTTCTTCCTC | - | 9663774 | 9663790 | -967 | -983 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TAAATGGG | - | 9663847 | 9663854 | -1040 | -1047 | |||
| AtREG443 | TAAATGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AAAGTCAA | - | 9663888 | 9663895 | -1081 | -1088 | |||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||