PlantPromoterDB promoter information of AT4G17490
Summary of Gene (AT4G17490)
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Overview
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Focused view (chromosome 4: 9754821-9753622)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G17490 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G17490
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 10 | - | 9753867 | -46 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 9753869 | -48 |
| TSS clone | G | clone | - | 9753867 | -46 |
| TSS clone | T | clone | - | 9753866 | -45 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTCCTATAAATA | - | 9753894 | 9753905 | -73 | -84 |
| Y Patch | TTTCCTCC | - | 9753825 | 9753832 | -4 | -11 |
| Y Patch | CCCTCTTCCTCT | - | 9753844 | 9753855 | -23 | -34 |
| Y Patch | CTCTCTCTTCTCC | - | 9753871 | 9753883 | -50 | -62 |
| Y Patch | TCTTTCCT | - | 9753901 | 9753908 | -80 | -87 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACACGCGTGT | - | 9753999 | 9754008 | -178 | -187 | |||
| AtREG536 | ACACGCGTGT | ABA, Drought | PPDB Motif | PLACE Motif | ACACNNG | ||||
| REG | AAAACCGGT | - | 9754012 | 9754020 | -191 | -199 | |||
| AtREG542 | AAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG436 | AAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CCCAATAT | - | 9754133 | 9754140 | -312 | -319 | |||
| AtREG509 | CCCAATAT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||