PlantPromoterDB promoter information of AT4G18150.1

Summary of Gene (AT4G18150.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G18150 TAIR NCBI
Gene model	AT4G18150.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29350.1); Has 362 Blast hits to 295 proteins in 47 species: Archae - 0; Bacteria - 2; Metazoa - 209; Fungi - 11; Plants - 7; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 10049211-10050410)

`Genome position from initiation codon` `TSS from cDNA TSS information AT4G18150.1 5'->3' (+) Promoter sequence AT4G18140.1 AT4G18140.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G18150.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak G clone - 10049438 AT4G18140.1, AT4G18140.2

TSS clone peak A clone - 10049394 AT4G18140.1, AT4G18140.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`G`	clone	-	10049438	AT4G18140.1, AT4G18140.2
TSS clone peak	`A`	clone	-	10049394	AT4G18140.1, AT4G18140.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTTCTCTCAT - 10049414 10049423 AT4G18140.1, AT4G18140.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTTCTCTCAT`	-	10049414	10049423	AT4G18140.1, AT4G18140.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TACGTGTCAT - 10049495 10049504 AT4G18140.1, AT4G18140.2

AtREG557 TACGTGTC   ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG389 ACGTGTCA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG438   CGTGTCAT ABA PPDB Motif PLACE Motif

REG CACGTGTCA - 10049543 10049551 AT4G18140.1, AT4G18140.2

AtREG366 CACGTGTC ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG389 ACGTGTCA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

REG ATATGGGCCTAAGCCCATTAT - 10049589 10049609 AT4G18140.1, AT4G18140.2

AtREG432 ATATGGGC              PPDB Motif GCCCA PLACE Motif

AtREG364 TATGGGCC             PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354   ATGGGCCT            PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG358    TGGGCCTA           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG360     GGGCCTAA          PPDB Motif GCCCA PLACE Motif GGGCC

AtREG563      GGCCTAAG         PPDB Motif PLACE Motif

AtREG634         CTAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG426          TAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378           AAGCCCAT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372            AGCCCATT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG357             GCCCATTA PPDB Motif GCCCA PLACE Motif

AtREG546              CCCATTAT PPDB Motif PLACE Motif

REG TCACGCGCT - 10049696 10049704 AT4G18140.1, AT4G18140.2

AtREG395 TCACGCGC PPDB Motif ACGCGC PLACE Motif

AtREG381 CACGCGCT PPDB Motif ACGCGC PLACE Motif