PlantPromoterDB promoter information of AT4G18465.1

Summary of Gene (AT4G18465.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G18465 TAIR NCBI
Gene model	AT4G18465.1
Description	RNA helicase, putative; FUNCTIONS IN: RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), Region of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT1G32490.1); Has 7224 Blast hits to 6791 proteins in 1024 species: Archae - 6; Bacteria - 1974; Metazoa - 1905; Fungi - 796; Plants - 374; Viruses - 693; Other Eukaryotes - 1476 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 10196056-10197255)

`Genome position from initiation codon` `TSS from cDNA TSS information AT4G18465.1 5'->3' (+) Promoter sequence AT4G18460.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G18465.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 2 + 10197016 -40

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	2	+	10197016	-40

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAACCGAACCA + 10196862 10196872 -194 -184

AtREG568 AAACCGAA    PPDB Motif AACCG(G/A) PLACE Motif

AtREG556 AACCGAAC   PPDB Motif AACCG(G/A) PLACE Motif

AtREG451   ACCGAACC PPDB Motif PLACE Motif

AtREG655    CCGAACCA PPDB Motif PLACE Motif

REG TTGAACCG + 10196889 10196896 -167 -160

AtREG640 TTGAACCG PPDB Motif AACCG(G/A) PLACE Motif

REG GACCCGAA + 10196927 10196934 -129 -122

AtREG597 GACCCGAA PPDB Motif GGGACCC PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAACCGAACCA`		+	10196862	10196872	-194	-184
	AtREG568	`AAACCGAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG556	`AACCGAAC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG451	`ACCGAACC`		PPDB Motif		PLACE Motif
	AtREG655	`CCGAACCA`		PPDB Motif		PLACE Motif
REG	`TTGAACCG`		+	10196889	10196896	-167	-160
	AtREG640	`TTGAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`GACCCGAA`		+	10196927	10196934	-129	-122
	AtREG597	`GACCCGAA`		PPDB Motif	`GGGACCC`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTTCTTCTTCC - 10196785 10196795 AT4G18460.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTTCTTCTTCC`	-	10196785	10196795	AT4G18460.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TGGTTCGGTTT - 10196862 10196872 AT4G18460.1

AtREG655 TGGTTCGG    PPDB Motif PLACE Motif

AtREG451 GGTTCGGT   PPDB Motif PLACE Motif

AtREG556   GTTCGGTT PPDB Motif AACCG(G/A) PLACE Motif

AtREG568    TTCGGTTT PPDB Motif AACCG(G/A) PLACE Motif

REG CGGTTCAA - 10196889 10196896 AT4G18460.1

AtREG640 CGGTTCAA PPDB Motif AACCG(G/A) PLACE Motif

REG TTCGGGTC - 10196927 10196934 AT4G18460.1

AtREG597 TTCGGGTC PPDB Motif GGGACCC PLACE Motif

REG GGCTTTTT - 10196996 10197003 AT4G18460.1

AtREG589 GGCTTTTT PPDB Motif PLACE Motif

REG CAAAACGCC - 10197058 10197066 AT4G18460.1

AtREG585 CAAAACGC PPDB Motif AAACG(C/G) PLACE Motif CAAAACGC

AtREG650 AAAACGCC PPDB Motif AAACG(C/G) PLACE Motif