PlantPromoterDB promoter information of AT4G19112.1
Summary of Gene (AT4G19112.1)
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Overview
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Focused view (chromosome 4: 10459493-10458294)
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Genome position
from initiation codon AT4G19110.2 TSS from cDNA TSS information AT4G19112.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G19112.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | - | 10459408 | -915 |
| TSS peak | A | 54 | - | 10459272 | -779 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 10459328 | -835 |
| TSS clone | A | clone | - | 10459327 | -834 |
| TSS clone | T | clone | - | 10459323 | -830 |
| TSS clone | A | clone | - | 10459272 | -779 |
| TSS clone | C | clone | - | 10459271 | -778 |
| TSS clone | A | clone | - | 10459220 | -727 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | AATATAAAAT | - | 10459296 | 10459305 | -803 | -812 |
| TATA Box | TTATATATG | - | 10459430 | 10459438 | -937 | -945 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACCACGTG | - | 10459451 | 10459458 | -958 | -965 | |||
| AtREG544 | ACCACGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | GGGCCATA | - | 10459475 | 10459482 | -982 | -989 | |||
| AtREG479 | GGGCCATA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| REG | GCCACGTA | - | 10459505 | 10459512 | -1012 | -1019 | |||
| AtREG413 | GCCACGTA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| REG | AAAGTCAA | - | 10459562 | 10459569 | -1069 | -1076 | |||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||