PlantPromoterDB promoter information of AT4G19640.1
Summary of Gene (AT4G19640.1)
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Overview
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Focused view (chromosome 4: 10690449-10689250)
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Genome position
from initiation codon AT4G19645.2 TSS from cDNA TSS information AT4G19640.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G19640.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 18 | - | 10689640 | -191 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 10689611 | -162 |
| TSS clone | A | clone | - | 10689604 | -155 |
| TSS clone | A | clone | - | 10689600 | -151 |
| TSS clone | G | clone | - | 10689593 | -144 |
| TSS clone | G | clone | - | 10689576 | -127 |
| TSS clone | A | clone | - | 10689575 | -126 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CATTGGGCCAA | - | 10689700 | 10689710 | -251 | -261 | |||
| AtREG461 | CATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG352 | ATTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG420 | TTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG484 | TGGGCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | CTTGGGCCTAAA | - | 10689715 | 10689726 | -266 | -277 | |||
| AtREG505 | CTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | TTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG358 | TGGGCCTA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG360 | GGGCCTAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG430 | GGCCTAAA | PPDB Motif | PLACE Motif | ||||||
| REG | CCCATTAT | - | 10689802 | 10689809 | -353 | -360 | |||
| AtREG546 | CCCATTAT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||