Summary of Gene (AT4G20440.4)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT4G20440.2 AT4G20440.3 AT4G20450.1 TSS from cDNA TSS information AT4G20440.4 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 44 | - | 11023752 | -136 |
TSS peak | A | 4 | - | 11023640 | -24 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 11023755 | -139 |
TSS clone | C | clone | - | 11023751 | -135 |
TSS clone | A | clone | - | 11023748 | -132 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTTATAAACC | - | 11023778 | 11023787 | -162 | -171 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACCCTAGA | - | 11023773 | 11023780 | -157 | -164 | |||
AtREG658 | ACCCTAGA | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
REG | TAAGCCCATAA | - | 11023803 | 11023813 | -187 | -197 | |||
AtREG426 | TAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG477 | AGCCCATA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG394 | GCCCATAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GTTTGGGCCCATAA | - | 11023820 | 11023833 | -204 | -217 | |||
AtREG474 | GTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG373 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG392 | TTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG422 | TGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG391 | GGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG364 | GGCCCATA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG394 | GCCCATAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TACACGTGTG | - | 11024025 | 11024034 | -409 | -418 | |||
AtREG453 | TACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACACNNG  | |||
AtREG460 | CACGTGTG | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |