PlantPromoterDB promoter information of AT4G21105.2

Summary of Gene (AT4G21105.2)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G21105 TAIR NCBI
Gene model	AT4G21105.2
Description	cytochrome-c oxidase/ electron carrier; FUNCTIONS IN: electron carrier activity, cytochrome-c oxidase activity; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIIa (InterPro:IPR003177); Has 44 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 11265273-11266472)

`Genome position from initiation codon` `AT4G21105.1 TSS from cDNA TSS information AT4G21105.2 5'->3' (+) Promoter sequence AT4G21100.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G21105.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 13 + 11265665 -608

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	13	+	11265665	-608

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone + 11265651 -622

TSS clone C clone + 11265652 -621

TSS clone G clone + 11265658 -615

TSS clone T clone + 11265659 -614

TSS clone T clone + 11265661 -612

TSS clone G clone + 11265668 -605

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	+	11265651	-622
TSS clone	`C`	clone	+	11265652	-621
TSS clone	`G`	clone	+	11265658	-615
TSS clone	`T`	clone	+	11265659	-614
TSS clone	`T`	clone	+	11265661	-612
TSS clone	`G`	clone	+	11265668	-605

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCTCCCTCTC + 11265698 11265709 -575 -564

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCTCCCTCTC`	+	11265698	11265709	-575	-564
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GCCGGTTCA + 11265503 11265511 -770 -762

AtREG637 GCCGGTTC PPDB Motif AACCG(G/A) PLACE Motif

AtREG480 CCGGTTCA PPDB Motif AACCG(G/A) PLACE Motif

REG TTCCGGTTTGG + 11265544 11265554 -729 -719

AtREG534 TTCCGGTT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG521 TCCGGTTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG496   CCGGTTTG PPDB Motif AACCG(G/A) PLACE Motif

AtREG550    CGGTTTGG PPDB Motif AACCG(G/A) PLACE Motif

REG TTCGGCCCGGCCCAATTG + 11265592 11265609 -681 -664

AtREG427 TTCGGCCC           PPDB Motif GCCCA PLACE Motif GGGCC

AtREG404      CCCGGCCC      CK PPDB Motif GCCCA PLACE Motif GGGCC

AtREG457       CCGGCCCA     CK PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG414        CGGCCCAA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352         GGCCCAAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG418          GCCCAATT PPDB Motif GCCCA PLACE Motif

AtREG647           CCCAATTG PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GCCGGTTCA`		+	11265503	11265511	-770	-762
	AtREG637	`GCCGGTTC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG480	`CCGGTTCA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TTCCGGTTTGG`		+	11265544	11265554	-729	-719
	AtREG534	`TTCCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG521	`TCCGGTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG496	`CCGGTTTG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG550	`CGGTTTGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TTCGGCCCGGCCCAATTG`		+	11265592	11265609	-681	-664
	AtREG427	`TTCGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG404	`CCCGGCCC`	CK	PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG457	`CCGGCCCA`	CK	PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG414	`CGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG352	`GGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG418	`GCCCAATT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG647	`CCCAATTG`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone - 11265462 AT4G21100.1

TSS clone peak T clone - 11265447 AT4G21100.1

TSS clone G clone - 11265420 AT4G21100.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	-	11265462	AT4G21100.1
TSS clone peak	`T`	clone	-	11265447	AT4G21100.1
TSS clone	`G`	clone	-	11265420	AT4G21100.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCTTTCTCT - 11265433 11265443 AT4G21100.1

Y Patch CCTCCTCTCTCCC - 11265459 11265471 AT4G21100.1

Y Patch TTCTTCTTC - 11265473 11265481 AT4G21100.1

Y Patch TTCTTCTT - 11265493 11265500 AT4G21100.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCTTTCTCT`	-	11265433	11265443	AT4G21100.1
Y Patch	`CCTCCTCTCTCCC`	-	11265459	11265471	AT4G21100.1
Y Patch	`TTCTTCTTC`	-	11265473	11265481	AT4G21100.1
Y Patch	`TTCTTCTT`	-	11265493	11265500	AT4G21100.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TGAACCGGC - 11265503 11265511 AT4G21100.1

AtREG480 TGAACCGG PPDB Motif AACCG(G/A) PLACE Motif

AtREG637 GAACCGGC PPDB Motif AACCG(G/A) PLACE Motif

REG CCAAACCGGAA - 11265544 11265554 AT4G21100.1

AtREG550 CCAAACCG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG496 CAAACCGG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG521   AAACCGGA PPDB Motif AACCG(G/A) PLACE Motif

AtREG534    AACCGGAA PPDB Motif AACCG(G/A) PLACE Motif

REG CAATTGGGCCGGGCCGAA - 11265592 11265609 AT4G21100.1

AtREG647 CAATTGGG           PPDB Motif PLACE Motif

AtREG418 AATTGGGC          PPDB Motif GCCCA PLACE Motif

AtREG352   ATTGGGCC         PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG414    TTGGGCCG        PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG457     TGGGCCGG       CK PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG404      GGGCCGGG      CK PPDB Motif GCCCA PLACE Motif GGGCC

AtREG427           GGGCCGAA PPDB Motif GCCCA PLACE Motif GGGCC

REG CGCAGCGT - 11265686 11265693 AT4G21100.1

AtREG369 CGCAGCGT PPDB Motif PLACE Motif