PlantPromoterDB promoter information of AT4G22350.1

Summary of Gene (AT4G22350.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G22350 TAIR NCBI
Gene model	AT4G22350.1
Description	ubiquitin carboxyl-terminal hydrolase family protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase/ zinc ion binding (TAIR:AT4G22285.1); Has 2784 Blast hits to 2384 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 1738; Fungi - 374; Plants - 244; Viruses - 0; Other Eukaryotes - 428 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 11807939-11806740)

`Genome position from initiation codon` `TSS from cDNA TSS information AT4G22350.1 5'->3' (-) Promoter sequence AT4G22360.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G22350.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 2 - 11807144 -205

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	2	-	11807144	-205

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GGCCTTTTAACCG - 11807217 11807229 -278 -290

AtREG459 GGCCTTTT      PPDB Motif PLACE Motif

AtREG645      TTTAACCG PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG GTGGCCCAATAA - 11807239 11807250 -300 -311

AtREG445 GTGGCCCA     PPDB Motif GCCCA PLACE Motif GCCAC, GGGCC, TGGGCY

AtREG420 TGGCCCAA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352   GGCCCAAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG355    GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG417     CCCAATAA PPDB Motif GCCCA PLACE Motif

REG TTATTGGGCT - 11807259 11807268 -320 -329

AtREG417 TTATTGGG   PPDB Motif GCCCA PLACE Motif

AtREG355 TATTGGGC PPDB Motif GCCCA PLACE Motif

AtREG402   ATTGGGCT PPDB Motif GCCCA PLACE Motif TGGGCY

REG AGGGTATT - 11807354 11807361 -415 -422

AtREG567 AGGGTATT PPDB Motif ACCCT PLACE Motif

REG TTCACGCGTTT - 11807384 11807394 -445 -455

AtREG631 TTCACGCG    Drought PPDB Motif PLACE Motif

AtREG633    ACGCGTTT PPDB Motif AAACG(C/G) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GGCCTTTTAACCG`		-	11807217	11807229	-278	-290
	AtREG459	`GGCCTTTT`		PPDB Motif		PLACE Motif
	AtREG645	`TTTAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
REG	`GTGGCCCAATAA`		-	11807239	11807250	-300	-311
	AtREG445	`GTGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GCCAC, GGGCC, TGGGCY`
	AtREG420	`TGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG352	`GGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG355	`GCCCAATA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG417	`CCCAATAA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TTATTGGGCT`		-	11807259	11807268	-320	-329
	AtREG417	`TTATTGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG355	`TATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG402	`ATTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
REG	`AGGGTATT`		-	11807354	11807361	-415	-422
	AtREG567	`AGGGTATT`		PPDB Motif	`ACCCT`	PLACE Motif
REG	`TTCACGCGTTT`		-	11807384	11807394	-445	-455
	AtREG631	`TTCACGCG`	Drought	PPDB Motif		PLACE Motif
	AtREG633	`ACGCGTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 8 + 11807649 AT4G22360.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	8	+	11807649	AT4G22360.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone + 11807774 AT4G22360.1

TSS clone C clone + 11807790 AT4G22360.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	+	11807774	AT4G22360.1
TSS clone	`C`	clone	+	11807790	AT4G22360.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box GTTATAAAGA + 11807614 11807623 AT4G22360.1

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`GTTATAAAGA`	+	11807614	11807623	AT4G22360.1
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AATACCCT + 11807354 11807361 AT4G22360.1

AtREG567 AATACCCT PPDB Motif ACCCT PLACE Motif

REG AAACGCGTGAA + 11807384 11807394 AT4G22360.1

AtREG633 AAACGCGT PPDB Motif AAACG(C/G) PLACE Motif

AtREG631 CGCGTGAA Drought PPDB Motif PLACE Motif

REG TTAAAGCC + 11807447 11807454 AT4G22360.1

AtREG545 TTAAAGCC PPDB Motif PLACE Motif

REG ATAAGGGC + 11807538 11807545 AT4G22360.1

AtREG616 ATAAGGGC PPDB Motif PLACE Motif