PlantPromoterDB promoter information of AT4G22720.2

Summary of Gene (AT4G22720.2)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G22720 TAIR NCBI
Gene model	AT4G22720.2
Description	glycoprotease M22 family protein; FUNCTIONS IN: endopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M22, O-sialoglycoprotein endopeptidase (InterPro:IPR009180), Peptidase M22, glycoprotease, subgroup (InterPro:IPR017861), Peptidase M22, glycoprotease (InterPro:IPR000905); BEST Arabidopsis thaliana protein match is: glycoprotease M22 family protein (TAIR:AT2G45270.1); Has 6754 Blast hits to 6730 proteins in 1648 species: Archae - 187; Bacteria - 2972; Metazoa - 216; Fungi - 190; Plants - 122; Viruses - 0; Other Eukaryotes - 3067 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 11936467-11937666)

`Genome position from initiation codon` `AT4G22710.1 AT4G22720.1 TSS from cDNA TSS information AT4G22720.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G22720.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak G clone + 11937053 -414

TSS clone peak T clone + 11937107 -360

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`G`	clone	+	11937053	-414
TSS clone peak	`T`	clone	+	11937107	-360

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTTCTCTCCC + 11937031 11937040 -436 -427

Y Patch TTTCTTCTT + 11937061 11937069 -406 -398

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTTCTCTCCC`	+	11937031	11937040	-436	-427
Y Patch	`TTTCTTCTT`	+	11937061	11937069	-406	-398
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CACGTCAC + 11936926 11936933 -541 -534

AtREG466 CACGTCAC ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG TTATTGGGCTAGGCCCATTTATAAACGACGCCGTTTA + 11936968 11937004 -499 -463

AtREG417 TTATTGGG                              PPDB Motif GCCCA PLACE Motif

AtREG355 TATTGGGC                             PPDB Motif GCCCA PLACE Motif

AtREG402   ATTGGGCT                            PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG475         CTAGGCCC                      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358          TAGGCCCA                     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354           AGGCCCAT                    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361            GGCCCATT                   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG386             GCCCATTT                  PPDB Motif GCCCA PLACE Motif

AtREG443              CCCATTTA                 PPDB Motif GCCCA PLACE Motif

AtREG565                      TAAACGAC         PPDB Motif PLACE Motif

AtREG415                       AAACGACG        PPDB Motif PLACE Motif

AtREG439                        AACGACGC       PPDB Motif PLACE Motif

AtREG537                         ACGACGCC      PPDB Motif PLACE Motif

AtREG540                           GACGCCGT    PPDB Motif PLACE Motif

AtREG497                            ACGCCGTT   PPDB Motif AAACG(C/G), CCAACGG PLACE Motif

AtREG524                             CGCCGTTT PPDB Motif AAACG(C/G) PLACE Motif

AtREG613                              GCCGTTTA PPDB Motif AAACG(C/G) PLACE Motif

REG TCGTCGTTTC + 11937025 11937034 -442 -433

AtREG648 TCGTCGTT   PPDB Motif PLACE Motif

AtREG415 CGTCGTTT PPDB Motif PLACE Motif

AtREG576   GTCGTTTC PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CACGTCAC`		+	11936926	11936933	-541	-534
	AtREG466	`CACGTCAC`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
REG	`TTATTGGGCTAGGCCCATTTATAAACGACGCCGTTTA`		+	11936968	11937004	-499	-463
	AtREG417	`TTATTGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG355	`TATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG402	`ATTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG475	`CTAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG358	`TAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG361	`GGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG386	`GCCCATTT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG443	`CCCATTTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG565	`TAAACGAC`		PPDB Motif		PLACE Motif
	AtREG415	`AAACGACG`		PPDB Motif		PLACE Motif
	AtREG439	`AACGACGC`		PPDB Motif		PLACE Motif
	AtREG537	`ACGACGCC`		PPDB Motif		PLACE Motif
	AtREG540	`GACGCCGT`		PPDB Motif		PLACE Motif
	AtREG497	`ACGCCGTT`		PPDB Motif	`AAACG(C/G), CCAACGG`	PLACE Motif
	AtREG524	`CGCCGTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG613	`GCCGTTTA`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
REG	`TCGTCGTTTC`		+	11937025	11937034	-442	-433
	AtREG648	`TCGTCGTT`		PPDB Motif		PLACE Motif
	AtREG415	`CGTCGTTT`		PPDB Motif		PLACE Motif
	AtREG576	`GTCGTTTC`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None