Summary of Gene (AT4G23270)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT4G23270 5'->3' (+) Promoter sequence AT4G23260.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 12171098 | -35 |
TSS clone peak | C | clone | + | 12171099 | -34 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCTCT | + | 12171136 | 12171143 | 3 | 10 |
Y Patch | TCTCTTTC | + | 12171146 | 12171153 | 13 | 20 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAAACCGG | + | 12171019 | 12171026 | -114 | -107 | |||
AtREG542 | AAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | - | 12167035 | AT4G23250.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TTATGGGCCATA | - | 12167100 | 12167111 | AT4G23250.1 | ||||
AtREG394 | TTATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG364 | TATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG490 | ATGGGCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG437 | TGGGCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG479 | GGGCCATA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | TAAGGGTA | - | 12167234 | 12167241 | AT4G23250.1 | ||||
AtREG570 | TAAGGGTA | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
REG | TTGACTTT | - | 12167253 | 12167260 | AT4G23250.1 | ||||
AtREG632 | TTGACTTT | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | GTTAGGCC | - | 12167306 | 12167313 | AT4G23250.1 | ||||
AtREG535 | GTTAGGCC | PPDB Motif |   | PLACE Motif |   |