PlantPromoterDB promoter information of AT4G23600
Summary of Gene (AT4G23600)
|
Overview
|
Focused view (chromosome 4: 12310379-12311578)
|
Genome position
from initiation codon AT4G23600.2 AT4G23600.3 TSS from cDNA TSS information AT4G23600 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT4G23600
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | + | 12310467 | -912 |
| TSS peak | A | 10 | + | 12310615 | -764 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 12310619 | -760 |
| TSS clone | A | clone | + | 12311255 | -124 |
| TSS clone | T | clone | + | 12311256 | -123 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CACTATATATTC | + | 12310582 | 12310593 | -797 | -786 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAATGGGC | + | 12310201 | 12310208 | -1178 | -1171 | |||
| AtREG386 | AAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CCCACGTG | + | 12310508 | 12310515 | -871 | -864 | |||
| AtREG464 | CCCACGTG | ABA, Auxin, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||