Summary of Gene (AT4G23660.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT4G23660.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 12331679 | -320 |
TSS clone peak | G | clone | - | 12331657 | -298 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTTTCTC | - | 12331661 | 12331669 | -302 | -310 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTCGGCCCAAAT | - | 12331741 | 12331752 | -382 | -393 | |||
AtREG427 | TTCGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG393 | TCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG414 | CGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG373 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG421 | GCCCAAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCCAATTG | - | 12331754 | 12331761 | -395 | -402 | |||
AtREG647 | CCCAATTG | PPDB Motif |   | PLACE Motif |   | ||||
REG | TGGGTCCC | - | 12331933 | 12331940 | -574 | -581 | |||
AtREG615 | TGGGTCCC | ABA | PPDB Motif | GGGACCC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |